14. Viral tree, 1252 taxa

One-per-species tree of viruses, made from the completed genomes available in RefSeq.

In order to provide node definitions for use with the virus1252 data module, we provide the reference phylogeny with numbers, divided into the sections: dsDNA viruses 1: Baculoviridae, Phycodnaviridae, and Irdoviridae, dsDNA viruses 2: Papillomaviridae and Polyomaviridae, and Poxviridae, dsDNA viruses 3: Adenoviridae and Herpesviridae, Reverse transcriptase viruses: Caulimoviridae, Retroviridae, and Hepadnaviridae, ssRNA+ 1: Caliciviridae, Nidovirales, ssRNA+ 2: Flaviviridae, ssRNA+ 3: Tombusviridae and Virgaviridae, ssRNA+ 4: Tymoviridae, ssRNA+ 5: Picornaviridae, Togaviridae, ssRNA+ 6: Potyviridae, ssRNA, segmented: Arenaviridae, Bunyaviridae, Mononegavirales, Orthomyxoviridae, ssDNA 1: Parvoviridae, ssDNA 2: Geminiviridae_1, ssDNA 2: Geminiviridae_2, dsDNA: Reoviridae

Tree files can be downloaded in * nexus * phyloxml * pdf formats.

The viral sequence data module virus1252.1 is annotated with the functional classifications present in Pfam release 27.

14.1. dsDNA viruses 1: Baculoviridae, Phycodnaviridae, and Irdoviridae

14.2. dsDNA viruses 2: Papillomaviridae and Polyomaviridae, and Poxviridae

14.3. dsDNA viruses 3: Adenoviridae and Herpesviridae

14.4. Reverse transcriptase viruses: Caulimoviridae, Retroviridae, and Hepadnaviridae

14.5. ssRNA+ 1: Caliciviridae, Nidovirales

14.6. ssRNA+ 2: Flaviviridae

14.7. ssRNA+ 3: Tombusviridae and Virgaviridae

14.8. ssRNA+ 4: Tymoviridae

14.9. ssRNA+ 5: Picornaviridae, Togaviridae

14.10. ssRNA+ 6: Potyviridae

14.11. ssRNA, segmented: Arenaviridae, Bunyaviridae

14.12. Mononegavirales

14.13. Orthomyxoviridae

14.14. ssDNA 1: Parvoviridae

14.15. ssDNA 2: Geminiviridae_1

14.16. ssDNA 2: Geminiviridae_2

14.17. dsDNA: Reoviridae